R script executor
Path |
pimlico.modules.r.script |
Executable |
yes |
Simple interface to R that just involves running a given R script, first substituting in some paths from the
pipeline, making it easy to pass in data from the output of other modules.
Options
Name |
Description |
Type |
script |
(required) Path to the script to be run. The script itself may include substitutions of the form ‘{{inputX}}’, which will be replaced with the absolute path to the data dir of the Xth input, and ‘{{output}}’, which will be replaced with the absolute path to the output dir. The latter allows the script to output things other than the output file, which always exists and contains the full script’s output |
string |